Information
on a Gene
|
Description
|
| OMIM |
Online Mendelian Inheritance in Man |
| The
Gene Card |
Integrate all biomedical information on a
gene |
Sequence Retrieve
|
Description
|
| NCBI
Tool Page |
BLAST, Orthologous, human-mouse
homology, Map Viewer, LocusLink, Vast Search, The Cancer Chromosome
Aberration Project, The Cancer Genome Anatomy Project, and lot more! |
| ENTREZ |
Retieve DNA or Protein sequence from GenBank |
Database Search
|
Description
|
| BLAST Similary
Search |
Remember to search NR, EST and STS to get complete coverage |
| Mouse
Genome Database |
1.The 2000–2001 Mouse Chromosome
Committee Reports 2. Release 15 of the MIT microsatellite map (Oct 1997)
3. The recombinant inbred strain database of R.W. Elliott (1997) and R.
W. Williams (2001) 4. Map Manger and text format chromosome maps (Apr
2001) |
| Human and
mouse genome at UC Santa Cruz |
Assembled human and mouse genome by the
public consortium. Very quick result and Nice browser function with
the Blat search. |
| BLAST C.
Elegan |
Complet C. Elegan Genome |
| BLAST Yeast |
Complet Yeast Genome |
| TIGR
Zebrafish Genome Blast |
|
| ZFIN
Zebrafish Genome Database Project |
|
| Genomatix |
Genomatix Home |
| Database
of transcription start sites |
Precise 5' end of cDNA sequences
based upon the “oligo-capping” method. By Feb 2002, contains 7889 human
genes, 59% of them have extended 5’ termini compared to the NCBI
sequences.) |
Mapping
|
Description
|
| GeneMap99 |
Search by position or maker name. Unfortunately, you can't
search the database by sequence. |
| UniGene |
Search by position or maker name. Unfortunately, you can't
search the database by sequence. |
| BAC/PAC
Resource |
Standard human and mouse BAC, PAC
libraries (Complete Coverage) |
Gene Identification
|
Description
|
| GenScan |
Intron-Exon boundaris. Good for medium size of genomic DNA
sequence |
| WebGene |
Tools for prediction and analysis of protein-coding gene
structure in Italy |
RNA
|
Description
|
| The RNA World |
A good resource for RNA related stuff. Web site is slow. |
Protein
|
Description
|
| ScanProsite |
analysis of protein sequences, MW, PI,
structures, as well as 2-D PAGE |
| ProfileScan
Server |
Motif Scan in a Protein Sequence |
| Codon Usage |
Search by Latin names of the organism |
| GOR IV |
Secondary structure |
| TMHMM |
Prediction of transmembrane helices in
protein orientation at EMBnet-CH |
Mouse
|
Description
|
| The Jackson Laboratory |
Mouse Geome Informatics |
| The
Whole mouse catalog |
everything about mouse research |
| KO
mice with immunophenotype (Jackson) |
Also, link to tumor biology, gene
expression, and mouse genome database etc. |
Cell Culture
|
Description
|
| ATCC |
Cell line, DNA etc. collection |