EMBOSS
Primer Design
STR search
DHPLC stuff
@Einstein
Tutorials

Molecular Biology Web Sites

General Molecular Biology Websites

Sites that link to other sites:

Online Tools @ molbiol-tools.ca: Has links to molecular biology pages all over the place.

More organised collections of Web resources:

SeWeR: SEquence analysis using WEb Resources. A unified interface for diverse web resources.
JustBio.com: Contains some hosted tools not present on the other mega-sites.

Fly Stuff:

BDGP Analysis Tools page.: Search the Drosophila genome, predict genes etc.

EMBOSS

The European Molecular Biology Open Software Suite:

EMBOSS homepage: Description of the EMBOSS suite.

Primer Design

Primer 3: PCR primer selection tool.
dCAPS Finder 2.0: Web-based primer design for single nucleotide polymorphism analysis.

Tandem Repeat Finders

Useful tool for finding potential STR polymorphisms:

Tandem Repeats Finder: " A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences."

DHPLC stuff

DHPLC tools @ Stanford: Useful things for designing amplicons for the WAVE machine
Transgenomic: Transgenomic's home page.

Other stuff

UCSC genome browser

Multiple sequence alignment

NEB Cutter V2.0 alignment

Webcutter: Webcutter.

GO term enrichment analysis

Clustal-O multiple sequence alignment

Online T-test calculator

Online ANOVA calculator

Online Mann-Whitney U-test calculator

Resources at Einstein

Adobe Creative Cloud Software

Microsoft Office

Bioinformatics Tutorials

How to use all this stuff:

Online Lectures on Bioinformatics: The Max Planck Institute For Molecular Genetics provides an excellent course on bioinformatics.
BioActivity: Bioinformatics Web Practical at UMBER (University of Manchester Bioinformatics Education and Research).