Mark L. Siegal, Daniel Promislow and Aviv Bergman, 2005, Functional and evolutionary inference in gene networks: Does topology matter? Genetica, special issue on "The microevolution of development: Patterns, processes, and mechanisms".
Aviv Bergman and Mark L. Siegal, 2003, Evolutionary Capacitance as a General Feature of Complex Gene Networks. Nature 424, 549-552.
Joanna Masel and Aviv Bergman, 2003, The Evolution of the Evolvability Properties of the Yeast Prion [PSI+]. Evolution 57(7) 1498-1512.
Mark L. Siegal and Aviv Bergman, 2002, Waddington's Canalization Revisited: Developmental Stability and Evolution. Proceedings of the National Academy of Sciences USA Vol. 99 No. 16 10528-10532.
Samuel Karlin, Luciano Brocchieri, Aviv Bergman, Jan Mrzek and Andrew J. Gentles, 2002, Amino Acid and Charge Runs in Complete Eukaryotic Genomes and Disease Associations. Proceedings of the National Academy of Sciences USA Vol. 99 No. 1 333-338.
Samuel Karlin, Aviv Bergman and Andrew Gentles, 2001, Annotation of the Drosophila genome. Nature 411, 259-260.